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Plot model convergence of multiple modelling alternatives

Source: R/Mod_Convergence_Plot_All.R
Convergence_Plot_All.Rd

This function generates and saves a series of diagnostic plots to assess the convergence of Hmsc models across multiple modelling alternatives. It checks model convergence using trace plots and Gelman-Rubin diagnostics for key model parameters.

Usage

Convergence_Plot_All(
  ModelDir = NULL,
  NOmega = 1000L,
  NCores = NULL,
  MarginType = "histogram"
)

Arguments

ModelDir

Character. Path to the root directory of the fitted model. The convergence outputs will be saved to the Model_Convergence_All subfolder.

NOmega

Integer. Number of species interactions sampled for Omega parameter diagnostics. Default: 1000L

NCores

Integer. Number of CPU cores to use for parallel processing.

MarginType

Character. The type of marginal plot to add to the main plot. Valid options are "histogram" (default) or "density".

Value

The function does not return anything but saves a series of diagnostic plots in the specified path.

Author

Ahmed El-Gabbas